RABIES Documentation
0.4.0

Content

  • Installation
    • PyPi
    • Container (Singularity/Docker)
    • Neurodesk
  • Running The Software
    • Input data in BIDS standard
    • Command Line Interface
    • Example execution syntax
    • Execution syntax with containerized installation (Singularity and Docker)
  • Understanding the Outputs
    • Preprocessing Outputs
    • Confound Correction Outputs
    • Analysis Outputs
  • Preprocessing quality control (QC)
  • Preprocessing Pipeline
    • Structural inhomogeneity correction
    • Common space alignment (i.e. Unbiased template generation + Atlas registration)
    • 3D EPI generation
    • Head motion estimation
    • Functional inhomogeneity correction
    • Susceptibility distortion estimation
    • Frame-wise resampling
    • Adapted workflow without structural scans (i.e. –bold_only)
  • Confound Correction pipeline
  • Analysis
    • Correlation-based analyses
    • ICA-based analyses
  • Bibliography
RABIES Documentation
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© Copyright 2019, CoBrALab and Gabriel Desrosiers-Gregoire and Gabriel A. Devenyi and Mallar Chakravarty. Revision ba7998fe.

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